This suggestion may not help but if you disconnect the battery from the car the windows can go a bit strange and need to be fully opened and shut before the 1 touch open works.
How about trying the reverse, disconnect the power (maybe just the window motor fuse if you have any doubt about radio key code!) then see what happens?
Otherwise I would be tempted to strip the trim off the inside of the door and see what is going on with the window mounting/clips etc.