The standard front discs on the 3.0 TDI are 320 x 30mm. On the S4, S5 they use the same calipers but different caliper carriers to fit 345 x 30mm discs.
On the S4 , S5 the calipers are painted black from the factory and have a logo on them but other wise are the same as the standard calipers on the 3.0 TDI.
A similar thing is done on the rear brakes, they use the same calipers on the S4, 55 but different caliper carriers to fit 330 x 22mm vented rear discs.
You can reuse the standard brake flexis and the rear brake dust shield are the larger size already on the 3.0 TDI.
I upgraded the brakes on my 3.0 TDI front and rear to S4 , S5 spec.
These brakes fit under 17 inch wheels as well.
Just changed to redstuff pads and although they are still being run in they are awesome.
Have a look at my build thread linked below.
Karl.