This is the way I went with mine, and couldn't be happier with the results.
Darkside EGR delete kit:
This kit replaces the EGR Valve and fits neatly between the Anti Shudder Valve and Inlet Manifold. Retaining the ASV means the engine still remains smooth when switching off the ignition, Here at Darkside Developments we only own and work with TDIs, so you can be assured that you are dealing...
www.darksidedevelopments.co.uk
This kit allows you to remove the entire EGR system, including the cooler. It frees up so much space (as you can see below), and makes the exhaust side of the engine bay much more open and easier to work on. You can also remove all the associated EGR vacuum hoses to tidy things up even further, as I did. It's up to you whether you bridge the EGR cooler coolant pipes, or do away with one of the pipes altogether (this is what I did, the pipework doesn't need to be anywhere near as long once cooler is gone).
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View attachment 257167
Darkside BKD intake manifold conversion kit (deletes the swirl flaps)
PPD170 Used BKD Aluminium Inlet Manifold Conversion Kit (Removes Swirl Flaps)
www.darksidedevelopments.co.uk
The swirl flaps are a known annoyance on the intake manifolds for these engines, so much better off deleting the system altogether, also improves airflow. Much like the EGR delete, you are then able to remove the vacuum supply for the flaps too, further tidying the engine bay.
ECU software
Final step is to remove the EGR (and in your case DPF) systems from the ECU software. This can be done with, or without modifications to the fuelling tables, depending on whether you are after more power/torque, or simply want the ECU to be happy with its new (and reduced!) hardware setup. I personally just had the EGR disabled, and left the power/torque stock. Depending on your technical ability, you can buy ECU flashers that will read/write the EEPROM of your ECU, so all you'd need to do would be to read your ECU, send it to a tuner and have them remove the EGR and DPF sections, then they will send it back and you'd flash it back to your car. This tends to save some money, as you no longer need to bring your car to their premises.
Observations and afterthoughts
After doing the above on my car, the difference it made to the engine was massive. Significantly smoother idling, cleaner power delivery, zero smoke, more responsive, and a good improvement in fuel economy as well. The engine does take a little longer to warm up in the absence of the EGR cooler (which is essentially an exhaust/coolant heat exchanger), but nothing significant at all. The engine oil also now actually stays clean, rather than turning black with carbon almost immediately after an oil change (as it did pre-delete).
Hope that helps!